The detailed information of tRNA gene sequence


Sequence ID>WENV170021041
Genome IDBBPF01001710
Search identical group
Phylum/Class[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 14294
End posion on genome 14389
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aagttggcac
tRNA gene sequence 
GGAGAGGTGGCCGAGTAGGTCGAAGGCGGTCGCCTGCTAAGCGATTATACGAGCTTTAAA
CTCGTATCGCGGGTTCGAATCCCGCCCTCTCCGCCA
Downstream region at tRNA end position 
ttttttgcgc
Secondary structure (Cloverleaf model)
>WENV170021041	Ser	GCT
                   c      GCCA ttttttgcgc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G C C C     A
    A T G A        G      | | | | |     G
  G         G C C G       G C G G G     C
  G           | | |                 T T
  T         A G G C
    C G A          G     TATACGAGCTTTAAACTCGTATC
                    G + T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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