The detailed information of tRNA gene sequence


Sequence ID>WENV170021277
Genome IDBBPF01005224
Search identical group
Phylum/Class[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 1337
End posion on genome 1433
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aattgctagt
tRNA gene sequence 
GGGAGTAGATGTCTGCCTGGTGAGGGCCCCGGACTTCAAATCCGGTGGCGGGCGTTGATC
CGTCCGTGGTGGGTTCGATTCCCACCTACTCCCGCCA
Downstream region at tRNA end position 
ttgttgattt
Secondary structure (Cloverleaf model)
>WENV170021277	SeC(p)	TCA
                   t      GCCA ttgttgattt
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     A - T
                     G - C          T T
                    A     C A C C C     A
      C C G        T      | | | | |     G
    T       T C T G       G T G G G     C
    G       + | + |                 T T
    G       G G G C
      T G A        C     TGGCGGGCGTTGATCCGTCCGTG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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