The detailed information of tRNA gene sequence


Sequence ID>ENV08002188
Genome IDABOM01004926
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 14
End posion on genome 100
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tgtaagtttt
tRNA gene sequence 
GGAGGCGTGGCGGAACAGGAATACGCGGCAGGCTCAAACCCTGCTACCTGAAAAGGTGTG
TGGGTTCAAATCCCTCCGCCTCCACCA
Downstream region at tRNA end position 
acaaaaaaaa
Secondary structure (Cloverleaf model)
>ENV08002188	Leu	CAA
                   t      ACCA acaaaaaaaa
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C A A        G      |   | | |     A
    A       G G C G       G T G G G     C
    G         | | |                 T T
    G       A C G C
      A A T        G     TACCTGAAAAGGTGT
                    G - C
                    C - G
                    A - T
                    G - C
                    G - C
                  C       C
                  T       A
                    C A A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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