The detailed information of tRNA gene sequence


Sequence ID>ENV08002190
Genome IDABOM01010830
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 111
End posion on genome 23
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGAGGATTGGCCGAGTGGTTTTAAGGCAGCAGTCTTGAAAACTGTCGTACCGCAAGGTAC
CGTGAGTTCGAATCCCACATCCTCCGCCA
Downstream region at tRNA end position 
aattcagttg
Secondary structure (Cloverleaf model)
>ENV08002190	Ser	TGA
                   c      GCCA aattcagttg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T
                     T - A          T A
                    T     C A C C C     A
    G T G A        G      | | |   |     G
  G         G C C G       G T G A G     C
  T           | | |                 T T
  T         A G G C
    T T A          A     CGTACCGCAAGGTACC
                    G + T
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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