The detailed information of tRNA gene sequence


Sequence ID>ENV08002193
Genome IDABOM01015477
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 104
End posion on genome 29
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
nnnnntatat
tRNA gene sequence 
GGGGTGATAGCTCAATTGGTAGAGCACTACCTTTGCAAGGTATAGGTTCAGGGTTCGAGT
CCCTGTCGCTCCACCA
Downstream region at tRNA end position 
tatagaacat
Secondary structure (Cloverleaf model)
>ENV08002193	Ala	TGC
                   t      ACCA tatagaacat
                     G - C
                     G - C
                     G + T
                     G - C
                     T + G
                     G - C
                     A - T          T G
                    T     G T C C C     A
      T A A        A      | | | | |     G
    T       C T C G       C A G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTT
                    C   T
                    T - A
                    A - T
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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