The detailed information of tRNA gene sequence


Sequence ID>ENV08002265
Genome IDABPP01011540
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
Species
Start position on genome 536
End posion on genome 610
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cgaataaaat
tRNA gene sequence 
GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC
TCCGATATTCTCCACtt
Downstream region at tRNA end position 
ttttgagaaa
Secondary structure (Cloverleaf model)
>ENV08002265	Ala	TGC
                   t      ACtt ttttgagaaa
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     A - T
                     T - A          T C
                    T     T A G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       C
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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