The detailed information of tRNA gene sequence


Sequence ID>ENV08002313
Genome IDABPQ01010409
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
Species
Start position on genome 225
End posion on genome 299
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
cgaaaacgca
tRNA gene sequence 
TGGCCGTTCGTCTATCGGTTAGGACGCCAGGTTTTCAACCTGGAAAGAGGGGTTCGATTC
CCCTACGGGCTGCCA
Downstream region at tRNA end position 
cctttcccgc
Secondary structure (Cloverleaf model)
>ENV08002313	Glu	TTC
                   a      GCCA cctttcccgc
                     T   T
                     G - C
                     G   G
                     C - G
                     C - G
                     G - C
                     T - A          T T
                    T     T C C C C     A
      C T A        C      | | | | |     G
    G       T C T G       A G G G G     C
    G       + | | |                 T T
    T       G G A C
      T A          G     AAAG
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       A
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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