The detailed information of tRNA gene sequence


Sequence ID>ENV08002341
Genome IDABPR01009105
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 03; altitude 310m AMSL; sample depth 1m below water level, 2-3mm depth into the mat
Species
Start position on genome 223
End posion on genome 298
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
cacactgccc
tRNA gene sequence 
GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGGGGTTCGATC
CCCCTTGGCTCCACCA
Downstream region at tRNA end position 
atatcccgag
Secondary structure (Cloverleaf model)
>ENV08002341	Ala	GGC
                   c      ACCA atatcccgag
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     A - T          C T
                    T     T C C C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    C - G
                  A       T
                  T       A
                    G G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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