The detailed information of tRNA gene sequence


Sequence ID>ENV08002538
Genome IDABPX01000024
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
Species
Start position on genome 408
End posion on genome 333
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
cgccaccctt
tRNA gene sequence 
GGGGCCGTAGCTCAGTTGGGAGAGCGCGTCGTTCGCAATGACGAGGTCAGGGGTTCGATT
CCCCTCGGCTCCACCA
Downstream region at tRNA end position 
gtccgtccct
Secondary structure (Cloverleaf model)
>ENV08002538	Ala	CGC
                   t      ACCA gtccgtccct
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     G - C          T T
                    T     T C C C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    G + T
                  T       A
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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