The detailed information of tRNA gene sequence


Sequence ID>ENV08002565
Genome IDABPX01006512
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
Species
Start position on genome 705
End posion on genome 629
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gggcgcgcgg
tRNA gene sequence 
AGGAGTGTAGCTCAATCGGCTAGAGCACCGGTCTCCAAAACCGGGGGTTGGGGGTTCGAG
TCCCTCCACTCCTGCCA
Downstream region at tRNA end position 
ttgggaagac
Secondary structure (Cloverleaf model)
>ENV08002565	Trp	CCA
                   g      GCCA ttgggaagac
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T A A        A      | + | | |     G
    C       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        A     GGGTT
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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