The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0001
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 198449
End posion on genome 198526
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
agatcagagg
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCGGAGCCGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
tcagacccgc
Secondary structure (Cloverleaf model)
>At0001	Arg	CCG
                   g      GCCA tcagacccgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCGGAGCCGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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