The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0006
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 446761
End posion on genome 446848
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tattatgggt
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGGCGAAGGGGGCGGGCTCAAGACCCGTTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
cccctctaca
Secondary structure (Cloverleaf model)
>At0006	Leu	CAA
                   t      ACCA cccctctaca
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    G C G A        G     TGGCGTAGGCCGGC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGGCGAAGGGGGCGGGCTCAAGACCCGTTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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