The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0008
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 584144
End posion on genome 584222
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
aatagagcag
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGACCAGAGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
catcttaaca
Secondary structure (Cloverleaf model)
>At0008	Arg	GCG
                   g      GCCA catcttaaca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C C A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGACCAGAGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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