The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0009
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 606038
End posion on genome 606114
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
agtggcctgg
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGTAGAGCGCCCGGCTGATAACCGGGAGGTCGGGGGTTCGAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
cccttccttc
Secondary structure (Cloverleaf model)
>At0009	Ile	GAT
                   g      ACCA cccttccttc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGTAGAGCGCCCGGCTGATAACCGGGAGGTCGGGGGTTCGAA
TCCCCCCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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