The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0011
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1011525
End posion on genome 1011646
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
cactcggagc
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTTCTAAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
caacagcccc
Secondary structure (Cloverleaf model)
>At0011	Arg	TCT
                   c      GCCA caacagcccc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTTCTAagcggggccgggaggcctcgg
ccctacctcggctgcgcggggacAGCCGGTGGTCCCGGGTTCAAATCCCGGCGGGCCCGC
CA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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