The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0020
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 192778
End posion on genome 192691
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aaatctgggt
tRNA gene sequence 
GCCGCGGTCGCCTAGCCTGGCCAGGGCGCCGGCCTGCTAAGCCGGTGGGGGAGACCCCGC
GCGGGTTCAAATCCCGCCCGCGGCGCCA
Downstream region at tRNA end position 
taaaggctcc
Secondary structure (Cloverleaf model)
>At0020	Ser	GCT
                   t      GCCA taaaggctcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        C      | | | | |     A
  T         T C C G       G C G G G     C
  G         + | | |                 T T
  G         G G G C
    C C A          G     TGGGGGAGACCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTCGCCTAGCCTGGCCAGGGCGCCGGCCTGCTAAGCCGGTGGGGGAGACCCCGC
GCGGGTTCAAATCCCGCCCGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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