The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0021
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 236428
End posion on genome 236316
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
cggcacaagc
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGGTCCCGGGTTCAAA
TCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
caacagcccc
Secondary structure (Cloverleaf model)
>At0021	Lys	CTT
                   c      GCCA caacagcccc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGaggggagtggaggg
gcttcgtcctggccccgcggaaGTCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK