The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0026
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 339994
End posion on genome 339917
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gccagtttgt
tRNA gene sequence 
GGGGCCGTCGTCTAGCCTGGCTAGGATGCGGGGCTTGGGACCCCGTGGTCCGGGGTTCAA
ATCCCCGCGGCCCCACCA
Downstream region at tRNA end position 
gctcagctga
Secondary structure (Cloverleaf model)
>At0026	Pro	TGG
                   t      ACCA gctcagctga
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCCTGGCTAGGATGCGGGGCTTGGGACCCCGTGGTCCGGGGTTCAA
ATCCCCGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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