The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0029
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 402462
End posion on genome 402386
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position
tagggagggt
tRNA gene sequence
GCCGGGGTAGCTCAGCTAGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCGGGGGTTCAAG
TCCCCTCCCCGGCGCCA
Downstream region at tRNA end position
gaaaccatcc
Secondary structure (Cloverleaf model)
>At0029	Asn	GTT
                   t      GCCA gaaaccatcc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     T C C C C     A
      C G A        A      + | | | |     A
    T       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCTCAGCTAGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCGGGGGTTCAAG
TCCCCTCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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