The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0030
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 403103
End posion on genome 402990
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aactgggggc
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGTCGGGGGTTCAAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
cagcccccat
Secondary structure (Cloverleaf model)
>At0030	Trp	CCA
                   c      ACCA cagcccccat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGaccccgcataggcctccagagggtgcggg
aggccgagGCTCCAGACCCGTAGGTCGGGGGTTCAAATCCCCCCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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