The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0036
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 881960
End posion on genome 881886
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ggtataagct
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGTGGTCCGGGGTTCGAATC
CCCGCGGCGGCACCA
Downstream region at tRNA end position 
gaagctaaaa
Secondary structure (Cloverleaf model)
>At0036	Phe	GAA
                   t      ACCA gaagctaaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      C     C T C G       C G G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGTGGTCCGGGGTTCGAATC
CCCGCGGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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