The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0038
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 986027
End posion on genome 985949
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position
atagtatggc
tRNA gene sequence
GCGGCCGTCGTCTAGCCTGGACTAGGACGCCGGCCTCCCAAGCCGGTGGTCCCGGGTTCA
AATCCCGGCGGCCGCACCA
Downstream region at tRNA end position
caaacacctc
Secondary structure (Cloverleaf model)
>At0038	Gly	CCC
                   c      ACCA caaacacctc
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGCCTGGACTAGGACGCCGGCCTCCCAAGCCGGTGGTCCCGGGTTCA
AATCCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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