The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0040
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1161734
End posion on genome 1161620
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
tagacggcca
tRNA gene sequence 
GGGGCCGTCGTCTAGCCTGGCTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
tgccgtccgc
Secondary structure (Cloverleaf model)
>At0040	Pro	GGG
                   a      ACCA tgccgtccgc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCCTGGCTAGGATGCCAGCCTGGGGagcgtatccccacccccgcgc
tggggggcgcccggatCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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