The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0043
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1194213
End posion on genome 1194137
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tagcctgggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCCGGCTTGCACCCGGGAGGCCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
ccctacacac
Secondary structure (Cloverleaf model)
>At0043	Ala	TGC
                   t      ACCA ccctacacac
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGCC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCCGGCTTGCACCCGGGAGGCCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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