The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0044
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1275750
End posion on genome 1275673
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
aaggagaagg
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGGTGGTCGGGGGTTCAA
ATCCCCCCGGGCCCGCCA
Downstream region at tRNA end position 
caccgccaaa
Secondary structure (Cloverleaf model)
>At0044	Arg	CCT
                   g      GCCA caccgccaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       G G G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGGTGGTCGGGGGTTCAA
ATCCCCCCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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