The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0046
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1391318
End posion on genome 1391241
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gcaatgggga
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGCCCAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Downstream region at tRNA end position 
tacaagaggg
Secondary structure (Cloverleaf model)
>At0046	Glu	TTC
                   a      ACCA tacaagaggg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C C A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGCCCAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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