The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0047
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1391457
End posion on genome 1391362
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position
actaactggg
tRNA gene sequence
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGTTAGTTCCCGGGTTCGA
ATCCCGGCCCCGGCTCCA
Downstream region at tRNA end position
tctaaccctt
Secondary structure (Cloverleaf model)
>At0047	Cys	GCA
                   g      TCCA tctaaccctt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TAGTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGaggacctggcccgtagagACCC
GTTAGTTCCCGGGTTCGAATCCCGGCCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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