The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0048
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1422799
End posion on genome 1422722
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position
aacaagggtg
tRNA gene sequence
GCCCGGGTAGCTCAGCCTGGATAGAGCGCCGGACTGTGGATCCGGAGGTCCCGGGTTCAA
ATCCCGGCCCGGGCCCCA
Downstream region at tRNA end position
caaaccatcc
Secondary structure (Cloverleaf model)
>At0048	His	GTG
                   g      CCCA caaaccatcc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTAGCTCAGCCTGGATAGAGCGCCGGACTGTGGATCCGGAGGTCCCGGGTTCAA
ATCCCGGCCCGGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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