The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0050
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1486515
End posion on genome 1486440
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
atcgacaggt
tRNA gene sequence 
AGCCGGGTCGTCTAGCGGCCCAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Downstream region at tRNA end position 
cccctacagc
Secondary structure (Cloverleaf model)
>At0050	Gln	CTG
                   t      ACCA cccctacagc
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C G G G G     C
    G       + | | +                 T T
    C       G G A T
      C C A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGCGGCCCAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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