The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0051
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1528663
End posion on genome 1528585
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gcctgcgcgg
tRNA gene sequence 
GCGGCCGTCGTCTAGCCTGGACTAGGACGCCGGCCTTCCAAGCCGGTGGTCCCGGGTTCA
AATCCCGGCGGCCGCACCA
Downstream region at tRNA end position 
ggcattttaa
Secondary structure (Cloverleaf model)
>At0051	Gly	TCC
                   g      ACCA ggcattttaa
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGCCTGGACTAGGACGCCGGCCTTCCAAGCCGGTGGTCCCGGGTTCA
AATCCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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