The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0052
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 40040
End posion on genome 40126
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cccaccgcgt
tRNA gene sequence 
GCAGGGGTCACCTAGCCTGGTAGGGTGTGGGACTGCTAATTCCATGTTCGCAAGAACACG
GGGGTTCGAATCCCCCTCCCTGCGCCA
Downstream region at tRNA end position 
tcaaaaactt
Secondary structure (Cloverleaf model)
>At0052	Ser	GCT
                   t      GCCA tcaaaaactt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C C C C C     A
      C G A        C      | | | | |     G
    C       T C C A       G G G G G     C
    T       + | | |                 T T
    G       G G G T
      G T A        G     TGTTCGCAAGAACAC
                    T - A
                    G - C
                    G - C
                    G + T
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTCACCTAGCCTGGTAGGGTGTGGGACTGCTAATTCCATGTTCGCAAGAACACG
GGGGTTCGAATCCCCCTCCCTGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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