The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0054
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 49008
End posion on genome 49152
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
taatacacgt
tRNA gene sequence 
GGGGTCGTAGCCTAGCCTGGTAGGGCGACGGGCTCCAGACCCGTAGGTCGCCGGTTCGAT
TCCGGTCGGCCCCAcat
Downstream region at tRNA end position 
catttatccc
Secondary structure (Cloverleaf model)
>At0054	Trp	CCA
                   t      Acat catttatccc
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     G - C          T T
                    T     T G G C C     A
      C G A        A      + | | | |     G
    C       T C C G       G C C G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     AGGTC
                    A - T
                   *C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTAGCCTAGCCTGGTAGGGCGACagtctgcgaaattaccgccaaGGGCTCCAGa
ggtctgtaccaagctggctgattgatgatgtaagtttggagctgcagagACCCGTAGGTC
GCCGGTTCGATTCCGGTCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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