The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0056
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 208125
End posion on genome 208201
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gccaatccgt
tRNA gene sequence 
GCCAGGGTAGCTCAGCCTGGGAGAGCACTCGGCTGAAGACCGAGCTGTCGCGCGTTCAAA
TCCCGCCCCTGGCACCA
Downstream region at tRNA end position 
caatgaaact
Secondary structure (Cloverleaf model)
>At0056	Phe	GAA
                   t      ACCA caatgaaact
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | |   |     A
    C       C T C G       G C G C G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     CTGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGGTAGCTCAGCCTGGGAGAGCACTCGGCTGAAGACCGAGCTGTCGCGCGTTCAAA
TCCCGCCCCTGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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