The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0057
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 237350
End posion on genome 237431
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position
gggggtggct
tRNA gene sequence
GCCAGGTTAGCCAAGTGGTACGGCGGCCGCCTCGAAAGCGGCTGCGCGCAAGCGCTCAGG
GGTTCGAATCCCTTACCTGGCGccc
Downstream region at tRNA end position
caatatggcg
Secondary structure (Cloverleaf model)
>At0057	Ser	CGA
                   t      Gccc caatatggcg
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     T T C C C     A
        G A        A      | + | | |     G
      T     A C C G       A G G G G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TGCGCGCAAGCGCTC
                    G - C
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGTTAGCCAAGTGGTACGGCGGCCGCCTCGAAAGCGGCTGCGCGCAAGCGCTCAGG
GGTTCGAATCCCTTACCTGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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