The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0060
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 348380
End posion on genome 348453
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
gatcctgcat
tRNA gene sequence 
GCTTCGATAGCTCAGCCTGGTAGAGCGTTACCTTGGTAAGGTAAAGGTCGTGGGTTCGGA
TCCCACTCGAAGCTcct
Downstream region at tRNA end position 
tttcttatcc
Secondary structure (Cloverleaf model)
>At0060	Thr	GGT
                   t      Tcct tttcttatcc
                     G - C
                     C - G
                     T - A
                     T - A
                     C - G
                     G - C
                     A - T          T A
                    T     C A C C C     G
      C G A        A      | | | | |     G
    C       C T C G       G T G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    T - A
                    T - A
                    A - T
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTTCGATAGCTCAGCCTGGTAGAGCGTTACCTTGGTAAGGTAAAGGTCGTGGGTTCGGA
TCCCACTCGAAGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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