The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0061
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 372562
End posion on genome 372666
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aggcgcctgt
tRNA gene sequence 
AGCCCGATAGTCTAGTCTGGCCAAGGATTCCGCGCTCTGGACGCGGAGACGGCAGTTCGA
ATCTGCCTCGGGCTActg
Downstream region at tRNA end position 
tactatcttg
Secondary structure (Cloverleaf model)
>At0061	Gln	CTG
                   t      Actg tactatcttg
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     C C G T C     A
    C T G A        A      | | | | |     G
  T         T C T G       G G C A G     C
  G         + | | +                 T T
  G         G G A T
    C C A A        T     AGAC
                    C - G
                    C - G
                    G - C
                    C - G
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGATAGTCTAGTCTGGCCAAaccttacggggccaaGGATTCCGCGCTCTGGatcta
gcgagtagacACGCGGAGACGGCAGTTCGAATCTGCCTCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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