The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0062
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 415380
End posion on genome 415453
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cgaatcctgt
tRNA gene sequence 
GCCAATGTAGCTCAGCCTGGTAGAGCATTCGCCTTGTAAGCGAAAGGTCGAGGGTTCAAA
GCCCTCCATTGGCTtca
Downstream region at tRNA end position 
acactaccct
Secondary structure (Cloverleaf model)
>At0062	Thr	TGT
                   t      Ttca acactaccct
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     T - A
                     G - C          G A
                    T     C T C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G A G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAATGTAGCTCAGCCTGGTAGAGCATTCGCCTTGTAAGCGAAAGGTCGAGGGTTCAAA
GCCCTCCATTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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