The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0063
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 890144
End posion on genome 890220
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
gaaccgtgct
tRNA gene sequence 
GCCGCCCTAGCTCAGCCCGGTAGAGCGTCGGACTGTTAATCCGTTGGTCGCCAGTTCAAG
TCTGGTGGGCGGCGCCA
Downstream region at tRNA end position 
acctgtatat
Secondary structure (Cloverleaf model)
>At0063	Asn	GTT
                   t      GCCA acctgtatat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G          T G
                    T     T G G T C     A
      C G A        A      + | | | |     A
    C       C T C G       G C C A G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    T   T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCCTAGCTCAGCCCGGTAGAGCGTCGGACTGTTAATCCGTTGGTCGCCAGTTCAAG
TCTGGTGGGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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