The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0065
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1120854
End posion on genome 1120930
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
accggatcgt
tRNA gene sequence 
GCCTCGGTGGCTCAGACCGGCAGAGCAAACGCCTCGTAAGCGTTAGGCCGTGGGTTCAAA
TCCCACCCGAGGCTCCA
Downstream region at tRNA end position 
attatccctg
Secondary structure (Cloverleaf model)
>At0065	Thr	CGT
                   t      TCCA attatccctg
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C A C C C     A
      A G A        G      | | | | |     A
    C       C T C G       G T G G G     C
    C       | | | |                 T T
    G       G A G C
      G C A        A     AGGCC
                    A - T
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGCTCAGACCGGCAGAGCAAACGCCTCGTAAGCGTTAGGCCGTGGGTTCAAA
TCCCACCCGAGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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