The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0070
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1706771
End posion on genome 1706844
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gccgctccac
tRNA gene sequence 
GGGGACGTGGGTTAGCTTGGTATACTGCCAGCCTCGGGCGCTGGAGATCATGGGTTCGAA
TCCCATCGTCCCCAtgc
Downstream region at tRNA end position 
aattagacgg
Secondary structure (Cloverleaf model)
>At0070	Pro	CGG
                   c      Atgc aattagacgg
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     T A C C C     A
      C G A        G      | | | | |     G
    T       T T G G       A T G G G     C
    T         | | +                 T T
    G       T A C T
      G T A        G     AGATC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGACGTGGGTTAGCTTGGTATACTGCCAGCCTCGGGCGCTGGAGATCATGGGTTCGAA
TCCCATCGTCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK