The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0073
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1957399
End posion on genome 1957472
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position
aaatttctgt
tRNA gene sequence
GGGTTTATGGCTCAGCCAGGTAGAGCACCGGACTCTTAATCCGGCTGTCAGGGGTTCGAA
TCCCCTTAAACCCGcct
Downstream region at tRNA end position
tctagatgta
Secondary structure (Cloverleaf model)
>At0073	Lys	CTT
                   t      Gcct tctagatgta
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     T - A
                     A - T          T A
                    T     T C C C C     A
      C G A        G      | | | | |     G
    C       C T C G       A G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     CTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTTATGGCTCAGCCAGGTAGAGCACCGGACTCTTAATCCGGCTGTCAGGGGTTCGAA
TCCCCTTAAACCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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