The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0076
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 28673
End posion on genome 28586
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
gcgctgaccc
tRNA gene sequence
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCAGGGCTTAGGACCCTGTCTTCTAGGAGTCC
GCGGGTTCGAATCCCGCCTCCCGCACCA
Downstream region at tRNA end position
acccggctta
Secondary structure (Cloverleaf model)
>At0076	Leu	TAG
                   c      ACCA acccggctta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     C G C C C     A
    C C G A        T      | | | | |     G
  T         G C C G       G C G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTTCTAGGAGTCC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCAGGGCTTAGGACCCTGTCTTCTAGGAGTCC
GCGGGTTCGAATCCCGCCTCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK