The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0077
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 168851
End posion on genome 168777
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position
taagacagtc
tRNA gene sequence
GGGCTCGTTGCATAGCATGGATAGTGCGATCGCTTGCGGAGCGATAGGTCGCCGGTTCGA
ATCCGGTCGGGCCCGcac
Downstream region at tRNA end position
attatcccgt
Secondary structure (Cloverleaf model)
>At0077	Arg	GCG
                   c      Gcac attatcccgt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     T G G C C     A
    A C G A        T      + | | | |     G
  T         T A C G       G C C G G     C
  G         + | | |                 T T
  G         G T G C
    A T A          G     AGGTC
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTTGCATAGCATGGATAGTGCGATCGCTTGCGGAGCGATAGGTCGCCGGTTCGA
ATCCGGTCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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