The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0078
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 237534
End posion on genome 237460
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ggatataggc
tRNA gene sequence 
GGACCCGTTGCATAGCCTGGATAGTGCAGGTGATTCCGGATCATCAGGTCGGGGGATCGA
AGCCCCCCGGGTCCTtga
Downstream region at tRNA end position 
tatgcatgag
Secondary structure (Cloverleaf model)
>At0078	Arg	CCG
                   c      Ttga tatgcatgag
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          G A
                    T     C C C C C     A
    C C G A        T      | | | | |     G
  T         T A C G       G G G G G     C
  G         + | | |                 A T
  G         G T G C
    A T A          A     AGGTC
                    G - C
                    G + T
                    T - A
                    G - C
                    A - T
                  T       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTTGCATAGCCTGGATAGTGCAGGTGATTCCGGATCATCAGGTCGGGGGATCGA
AGCCCCCCGGGTCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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