The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0080
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1103646
End posion on genome 1103555
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
caggaccgcc
tRNA gene sequence 
GGACCGGTTGTCTAGTGGTCAGGATGACGCACTCACACTGCGTAGGTCATGGGTTCGACC
CCCATCCGGTCCAtca
Downstream region at tRNA end position 
ctataatatg
Secondary structure (Cloverleaf model)
>At0080	Val	CAC
                   c      Atca ctataatatg
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          C C
                    T     T A C C C     A
      T G A        T      | | | | |     G
    G       T C T G       A T G G G     C
    G       + | | +                 T T
    T       G G A T
      C A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    C - G
                    A - T
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTTGTCTAGTGGTCAGGATGACGCACTCACACTGCGTAagggcatctgccccgc
gacGGTCATGGGTTCGACCCCCATCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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