The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0082
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1167038
End posion on genome 1166963
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position
gcggcaatta
tRNA gene sequence
GCTCCTGTGGTGTAGTCCGGCCAAGCATACTGCCCTCTCAAGGCAGTGATCCCGGGTTCA
AATCCCGGCGGGAGCAtta
Downstream region at tRNA end position
tttctaggaa
Secondary structure (Cloverleaf model)
>At0082	Glu	CTC
                   a      Atta tttctaggaa
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     T + G
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G         + | | +                 T T
  G         G C A T
    C C A A        A     TGATC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCTGTGGTGTAGTCCGGCCAAGCATACTGCCCTCTCAAGGCAGTGATCCCGGGTTCA
AATCCCGGCGGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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