The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0083
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1252685
End posion on genome 1252609
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
cagcgctacc
tRNA gene sequence 
GGGACCGTAGTCTAGCTTGGCATGATTCTGGTTTTGGGTACCAGAGGCCGCAGGTTCAAA
TCCTGCCGGTCCCACCA
Downstream region at tRNA end position 
gccgcgacac
Secondary structure (Cloverleaf model)
>At0083	Pro	TGG
                   c      ACCA gccgcgacac
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     C G T C C     A
      C G A        A      | | | | |     A
    T       T C T G       G C A G G     C
    T         | | +                 T T
    G       T G A T
      G C A        T     AGGCC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  T       T
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTAGTCTAGCTTGGCATGATTCTGGTTTTGGGTACCAGAGGCCGCAGGTTCAAA
TCCTGCCGGTCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK