The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0085
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1613296
End posion on genome 1613212
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ggggcccggt
tRNA gene sequence 
GCGGGTGTAGCCCAGCCTGGTCAAAGGCGCTAGCTTGAGGGGCTAGTCTCTTAGGAGTTC
GTGGGTTCAAATCCCATCGCCCGCAccc
Downstream region at tRNA end position 
atggatctca
Secondary structure (Cloverleaf model)
>At0085	Leu	GAG
                   t      Accc atggatctca
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T + G
                     G - C          T A
                    T     T A C C C     A
    C C G A        A      + | | | |     A
  T         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCTTAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    C - G
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGTGTAGCCCAGCCTGGTCAAAGGCGCTAGCTTGAGGGGCTAGTCTCTTAGGAGTTC
GTGGGTTCAAATCCCATCGCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK