The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0087
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1679608
End posion on genome 1679515
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tgcagcccgt
tRNA gene sequence 
GCTCCTGTGGTGTAGTCCGGTCAAGCATACTGCCCTTTCAAGGCAGTGATCCCGGGTCCA
AATCCCGGCGGGAGCACCA
Downstream region at tRNA end position 
agatttattt
Secondary structure (Cloverleaf model)
>At0087	Glu	TTC
                   t      ACCA agatttattt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     T + G
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G         + | | +                 T C
  G         G C A T
    T C A A        A     TGATC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCTGTGGTGTAGTCCGGTCAAGCATACTGCCCTTTCAAGGCAGTGATCCCGGGTCCA
AAttcgacagatggaagTCCCGGCGGGAGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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