The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0089
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1705584
End posion on genome 1705508
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
cggttttcgc
tRNA gene sequence 
GGGCCGGTCGTCTAGTCTGGTAGGATGCGCCCTTGGCATGGGCGAGATCGAGGGTTCAAA
TCCCTCTCGGTCCACCA
Downstream region at tRNA end position 
tcaaatagtg
Secondary structure (Cloverleaf model)
>At0089	Ala	GGC
                   c      ACCA tcaaatagtg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G + T          T A
                    T     C T C C C     A
      T G A        C      | | | | |     A
    C       T C T G       G A G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     AGATC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTCGTCTAGTCTGGTAGGATGCGCCCTTGGCATGGGCGAGATCGAGGGTTCAAA
TCCCTCTCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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